Eco-Tours in Puerto Rico

30 boats available

The best out of 30 deals in Puerto Rico - enter dates to check availability

Top Eco-Tours in Puerto Rico

    Experience tranquility on our backwater lagoon tour! Over two hours, glide through calm brackish waters while observing diverse wildlife, including birds, iguanas, caimans, manatees, and stingrays. Our intimate tours are specially designed for up to six passengers, ensuring a personalized adventure with our knowledgeable captain. Enjoy the beauty of the lagoons while also taking advantage of our fishing opportunities. This perfect blend of relaxation and exploration promises unforgettable moments.

    2 Hr – Backwater Wildlife Tour
    :
    US $299
  • Meet the Captain

    Zaltlifepr

    Fajardo

    Departing from Fajardo, explore the islands of Icacos and Palomino for a perfect day on the water. ⚓ 4-Hour Trip (8:30 a.m. – 12:30 p.m) • Visit Icacos & Palomino • Snack platter • Float mat & snorkeling gear • Music • Soft drinks & water up to 6 guests Boat trips depart from Villa Marina, Fajardo, and are operated by licensed Capt. Pablo.

    4 Hour – 2 Islands Trip
    :
    US $425

    Enjoy a All inclusive fullday private boat rental departing from Fajardo. This option is ideal for those who prefer a boat rental up to 6 guests with all included snacks, drinks, beers. The rental includes a licensed captain and private use of the boat. Visiting two Islands perfect for relaxing, cruising, swimming, and enjoying a full day on the water around nearby islands like Icacos and Palominos with al the amenities included, just you and your family or friends.

    FULLDAY Private Boat Trip
    :
    US $899

    Visit the island of Culebrita or Vieques Island. Its a full day 6 to 8 hours tours to a exotic beach . Top 10 beach in the world . It take 45 minutes to get to the island is all worth it. That include drinks, rum and grill. Snorkeling ect One group of max 6 people.

    Full day Culebra Island or Vieques
    :
    US $1,000

    Snokeling tour Visit Icacos & Palomino best spots with me im pretty sure you going to have the best snorkeling fully guided tour around the coast of Fajardo PR

    Snokeling tour
    :
    US $600

    Departing from Fajardo, Puerto Rico, the trip can be set to visit Palomino or Icacos islands. If you would like to visit Vieques or Culebra, please let us know so we can provide you with a customized quote. The trip includes Snacks & Refreshments: -Wraps -Seasonal fruits -Sodas, bottled water, and plenty of ice *You may bring additional food or alcohol, except red wine Water fun amenities: -Snorkeling gear -Floating mat for relaxing on the water

    6 Hr – Island Hopping Adventure
    :
    US $950
  • Meet the Captain

    Experience San Juan Bay under the bright Caribbean sun on this relaxing afternoon sightseeing cruise. As you travel along the historic shoreline of Old San Juan, you'll enjoy incredible views of El Morro, La Fortaleza, the city walls, and the cruise port from the water. A knowledgeable guide will point out important landmarks and share stories about the island's past, creating a fun and informative experience for everyone on board.

    1 Hr – Afternoon San Juan Tour
    :
    US $85

    In the Charter of the Caribbean, you have the privacy to go on a new and private boat with a certified captain and a host who will let you explore any of our chosen destinations, making your experience enjoyable and unique. The Charter Concept Choose your destination with a group of up to 6 people. We have the option of booking a half or full day with us. Our destination options are some of the most beautiful places Puerto Rico has to offer.

    5 Hour – Icaco or Palomino Tour
    :
    US $750

    Your Day, Your Way! Experience La Parguera beyond the ordinary. Enjoy a private cruise through its cays and mangroves, with time to swim, unwind, and take in the beauty around you. Your captain’s background in marine biology brings a special perspective to the journey, while you decide how the day unfolds. Your Boat. Your Pace. Your Experience.

    4 Hr – Private Day Experience
    :
    US $450
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Eco-Tours in Puerto Rico

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Puerto Rico

5.0
/5
Based on 131 reviews by boaters

What boaters said about Eco-Tours

  • 5.0
    /5
    (4 Hour – Natural Reserve of Fajardo)

    Carlos is the best!

    Carlos loves the island and it shows. Patient, knowledgeable, and a welcoming spirit. Great for families. We were a group of 6. You don’t need to bring a thing.The food and drinks were delicious and fresh. The snorkeling was the best I’ve ever experienced in 15 years. We will book a trip with Carlos every time we return.
    Vanessa B.
    Vanessa B.
    Reviewed on Jul 26, 2026
  • 5.0
    /5
    (2 Hour – San Juan Bay Sunset Cruise)

    Best trip ever!

    My boyfriend and I enjoyed the sunset cruise. Our captain Luis was very informative and did a great job. I would book again and recommend anyone else to book also.
    Shamia M.
    Shamia M.
    Reviewed on Jun 10, 2026
  • 5.0
    /5
    (4 Hour – Cayo Caracoles Adventure)

    Captain Victor

    Captain Victor was awesome very helpful he was on time to pick us up and did a excellent job cooking for us
    Carlos F.
    Carlos F.
    Reviewed on Jun 8, 2026
  • 5.0
    /5
    (6 Hr – Vieques Island Snorkeling)

    Fun Adventure!

    Captain Matt and his first mate, Alberto were awesome! They took us to great snorkeling spots and we saw sea turtles, sting rays and lots of fish! Vieques was beautiful!
    Catherine B.
    Catherine B.
    Reviewed on Apr 6, 2026
  • 5.0
    /5
    (6 Hr – Vieques Island Snorkeling)

    Great Boat a experience’

    Excellent Experience! Captain Matthew and Jerry were amazing. My family had a great time!
    Angelica A.
    Angelica A.
    Reviewed on Apr 5, 2026